Identification and pesticide degradation test of bacterial consortium of contaminated soil
Abstract
Excessive use of pesticides in the process of cultivating shallots results in contamination of the soil. Indigenous bacteria in soil that contaminated with the chlorpyrifos pesticide suspected could used as bioremediation agent of soil contaminated with chlorpyrifos pesticide. The purpose of this study was to identify and obtain a consortium of bacteria capable in degrading pesticides on shallot fields contaminated with the pesticide chlorpyrifos. The method used in this research is the bacteria isolation using soil extract, morphological identification, molecullar identification using Next Generation Sequencing (NGS), analysis of bacterial diversity index and consortium bacterial degradation test in order to reduce levels of the chlorpyrifos pesticide. The results of this study found 16 isolates of bacteria at each study site that were resistant to 100ppm of the pesticide chlorpyrifos so that these isolates were chosen to be used as a consortium of bacteria. Molecular identification of the bacterial consortium showed that there were 10 genera consisting of Cutibacterium, Streptomyces, Staphylococcus, Ensifer, Ochrobactrum, Achromobacter, Escherichia shigella, Klebsiella, Acinetobacter, and Pseudomonas. The bacterial diversity index in shallot soils reached 2,040 and 1,467 on forest soils The reduction efficiency of the bacterial consortium using the method of growing cells and supernatant were 94.48% and 98.88%, respectively.
Keywords
Full Text:
PDFReferences
Alizadeh, R., Rafati, L., Ebrahimi, A. A., Ehrampoush, M. h., & Sedighi Khavidak, S. (2018). Chlorpyrifos Bioremediation in the Environment: A Review Article [Systematic Review]. Journal of Environmental Health and Sustainable Development, 3(3), 606-615. http://jehsd.ssu.ac.ir/article-1-126-en.html. eng
Atolia, E., Cesar, S., Arjes, H. A., Rajendram, M., Shi, H., Knapp, B. D., . . . Huang, K. C. (2020). Environmental and Physiological Factors Affecting High-Throughput Measurements of Bacterial Growth. mBio, 11(5), e01378-01320. https://doi.org/doi:10.1128/mBio.01378-20.
Chaieb, K., Hagar, M., & Radwan, N. R. E. (2016). Biodegradation and decolorization of azo dyes by adherent Staphylococcus lentus strain. Applied Biological Chemistry, 59(3), 405-413. https://doi.org/10.1007/s13765-016-0169-4.
Cui, D., Li, G., Zhao, M., & Han, S. (2014). Decolourization of azo dyes by a newly isolated Klebsiella sp. strain Y3, and effects of various factors on biodegradation. Biotechnology & Biotechnological Equipment, 28(3), 478-486. https://doi.org/10.1080/13102818.2014.926053.
Gilani, R. A., Rafique, M., Rehman, A., Munis, M. F. H., Rehman, S. u., & Chaudhary, H. J. (2016). Biodegradation of chlorpyrifos by bacterial genus Pseudomonas. Journal of Basic Microbiology, 56(2), 105-119. https://doi.org/10.1002/jobm.201500336.
González-Benítez, N., Durante-Rodríguez, G., Kumar, M., & Carmona, M. (2021). Editorial: Biotechnology for Arsenic Detection and Bioremediation [Editorial]. Frontiers in Microbiology, 12. https://doi.org/10.3389/fmicb.2021.743109. English
Harsanti, E. S., Martono, E., Sudibyakto, H. A., & Sugiharto, E. (2015). RESIDU INSEKTISIDA KLORPIRIFOS DALAM TANAH DAN PRODUK BAWANG MERAH Allium ascalonicum L, DI SENTRA PRODUKSI BAWANG MERAH DI KABUPATEN BANTUL, YOGYAKARTA [residu klorpirifos, tanah, produk, bawang merah, bantul]. Ecolab, 9(1), 10. https://doi.org/10.20886/jklh.2015.9.1.26-35.
Hegde, D. R., Manoharan, T., & Sridar, R. (2017). Identification and characterization of bacterial isolates and their role in the degradation of neonicotinoid insecticide thiamethoxam. Journal of Pure and Applied Microbiology, 11(1), 393-400. https://doi.org/10.22207/JPAM.11.1.51.
Hong, Y.-H., Ye, C.-C., Zhou, Q.-Z., Wu, X.-Y., Yuan, J.-P., Peng, J., . . . Wang, J.-H. (2017). Genome Sequencing Reveals the Potential of Achromobacter sp. HZ01 for Bioremediation [Original Research]. Frontiers in Microbiology, 8. https://doi.org/10.3389/fmicb.2017.01507. English
Huang, Y., Zhang, W., Pang, S., Chen, J., Bhatt, P., Mishra, S., & Chen, S. (2021). Insights into the microbial degradation and catalytic mechanisms of chlorpyrifos. Environmental Research, 194, 110660. https://doi.org/10.1016/j.envres.2020.110660.
Hussaini, S. Z., Maan, S., & Iqbal, M. A. (2013). Isolation of Bacteria for Degradation of Selected Pesticides. Advances in Bioresearch, 4(3), 82-85. https://soeagra.com/abr/abrsept_2013/15.pdf.
Imamuddin, H., Laili, N., & Rahmansyah, M. (2017). Pertumbuhan Bakteri Hasil Isolasi dari Tanah Perkebunan yang Tumbuh pada Media Mengandung Pestisida Propoksur dan Karbaril. Jurnal Biologi Indonesia, 8(2), 317-328. https://e-journal.biologi.lipi.go.id/index.php/jurnal_biologi_indonesia/article/view/3054.
Jaiswal, S., Bara, J. K., Soni, R., & Shrivastava, K. (2017). Bioremediation of chlorpyrifos contaminated soil by microorganism. International Journal of Environment, Agriculture and Biotechnology, 2(4), 1624–1630. https://doi.org/10.22161/ijeab/2.4.21
Joko, T., Anggoro, S., Sunoko, H. R., & Rachmawati, S. (2017). Pesticides Usage in the Soil Quality Degradation Potential in Wanasari Subdistrict, Brebes, Indonesia. Applied and Environmental Soil Science, 2017, 5896191. https://doi.org/10.1155/2017/5896191.
Kulkarni, A. G., & Kaliwal, B. B. (2018). Bioremediation of Methomyl by Escherichia coli. In E. D. Bidoia & R. N. Montagnolli (Eds.), Toxicity and Biodegradation Testing (pp. 75-86). Springer New York. https://doi.org/10.1007/978-1-4939-7425-2_4
Lestari, S., Denny, H. M., & Setyaningsih, Y. (2019). Analisis Persepsi Petani Bawang Merah Dalam Penggunaan Pestisida Sebagai Dasar Penyusunan Policy Brief di Kabupaten Brebes. VISIKES: Jurnal Kesehatan Masyarakat, 18(2). https://publikasi.dinus.ac.id/index.php/visikes/article/view/2722.
Ma. Laura, O.-H., Enrique, S.-S., Edgar, D.-G., & María Luisa, C.-G. (2013). Pesticide Biodegradation: Mechanisms, Genetics and Strategies to Enhance the Process. In C. Rolando & R. Francisca (Eds.), Biodegradation (pp. Ch. 10). IntechOpen. https://doi.org/10.5772/56098
Mallick, K., Bharati, K., Banerji, A., Shakil, N. A., & Sethunathan, N. (1999). Bacterial Degradation of Chlorpyrifos in Pure Cultures and in Soil. Bulletin of Environmental Contamination and Toxicology, 62(1), 48-54. https://doi.org/10.1007/s001289900840.
Paiki, K., Kalor, J. D., Indrayani, E., & Dimara, L. (2018). Distribusi Kelimpahan dan keanekaragaman zooplankton di perairan pesisir Yapen Timur, Papua. Maspari Journal: Marine Science Research, 10(2), 199-206. https://ejournal.unsri.ac.id/index.php/maspari/article/view/5953.
Parte, S. G., Mohekar, A. D., & Kharat, A. S. (2017). Microbial degradation of pesticide: a review. African Journal of Microbiology Research, 11(24), 992-1012. https://doi.org/10.5897/AJMR2016.8402.
Puspitasari, D. J., & Khairuddin, K. (2016). Kajian bioremediasi pada tanah tercemar pestisida. KOVALEN: Jurnal Riset Kimia, 2(3). https://doi.org/10.22487/j24775398.2016.v2.i3.7541.
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., . . . Glöckner, F. O. (2013). The SILVA ribosomal RNA gene database project: improved data processing and web-based tools. Nucleic Acids Res, 41(Database issue), D590-596. https://doi.org/10.1093/nar/gks1219. eng
Ramadass, M., & Thiagarajan, P. (2017). Effective pesticide nano formulations and their bacterial degradation. IOP Conference Series: Materials Science and Engineering, 263(2), 022050. https://doi.org/10.1088/1757-899X/263/2/022050.
Sahlan, A. Q., Kusdiyantini, E., Pujiyanto, S., & Antonius, S. (2014). Isolasi dan karakterisasi isolat konsorsium bakteri lahan pertanian sebagai potensi degradasi pestisida propoxur. Jurnal Akademika Biologi, 3(4), 33-38. https://ejournal3.undip.ac.id/index.php/biologi/article/view/19458.
Sasikala, C., Jiwal, S., Rout, P., & Ramya, M. (2012). Biodegradation of chlorpyrifos by bacterial consortium isolated from agriculture soil. World Journal of Microbiology and Biotechnology, 28(3), 1301-1308. https://doi.org/10.1007/s11274-011-0879-z.
Sopeña, F., Laiz, L., Morillo, E., Sanchez-Trujillo, M. A., Villaverde, J., Jurado, V., & Saiz-Jimenez, C. (2014). Phenanthrene Biodegradation by Pseudomonas xanthomarina Isolated from an Aged Contaminated Soil. CLEAN – Soil, Air, Water, 42(6), 785-790. https://doi.org/10.1002/clen.201300247.
Yadav, M., Shukla, A. K., Srivastva, N., Upadhyay, S. N., & Dubey, S. K. (2016). Utilization of microbial community potential for removal of chlorpyrifos: a review. Critical Reviews in Biotechnology, 36(4), 727-742. https://doi.org/10.3109/07388551.2015.1015958.
Zheng, Y., Long, L., Fan, Y., Gan, J., Fang, J., & Jin, W. (2013). A review on the detoxification of organophosphorus compounds by microorganisms. African Journal of Microbiology Research, 7(20), 2127-2134. https://doi.org/10.5897/ajmr12.2017
Refbacks
- There are currently no refbacks.