Conventional and Mixed Model Approach to Estimate Heterosis of the Growth Traits in Boer Goat’s Crossbred Offspring Populations

Nuzul Widyas, Sigit Prastowo, Tristianto Nugroho, Adi Ratriyanto

Abstract

Heterosis is often utilized as a success indicator in a crossbreeding program. It is defined as the deviation of the crossbred means relative to their parental breeds. Heterosis mechanism is highly dependent on the genetic factors and thus, we incorporated genetic information in its estimation. The objective of this article was to compare heterosis estimated with conventional and mixed model approaches. In total, phenotypes of 3804 individuals were recorded. Data were obtained from a crossbreeding experiment involving Boer bucks and Jawarandu does. Observed traits were birth weight, weaning weight and average daily gain. Conventional and mixed model methods were used to estimate the heterosis. The heterosis values (%) between B×B vs B×J, estimated with conventional method were -11.38, -10.51 and -10.39; with mixed model were -6.23, -9.27 and -9.68 for BW, WW and ADG respectively. Heterosis values in B×(B×J) relative to B×B, estimated with conventional method were -6.16, -10.35 and -11.69; whereas with mixed model were -8.01, -10.82 and -9.14 for BW, WW and ADG respectively. Conventional method tends to underestimate the means phenotype with lower standard errors compared to mixed model analysis results in all traits. Conventional method also introduces biased heterosis estimates compared to the mixed model. Conventional method ignores any potential effects in the estimation procedures; whereas mixed model approach incorporates all the systematic and random effect including family relationship information. Thus, mixed model produced more reliable results in genetic parameters estimation. We recommend employing mixed model analysis in estimating heterosis.

Keywords

Boer goat; crossbreeding; genetic parameters; heterosis; Jawarandu goat; mixed model

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References

Agus, A., & Widi, T. S. M. (2018). Current situation and future prospects for beef production in Indonesia — A review. Asian-Australasian Journal of Animal Sciences, 31(7), 976–983. Crossref

Bourdon, R. M. (2014). Understanding Animal Breeding (2nd ed.). Edinburgh Gate: Pearson Education Limited.

Browning, R. J., & Leite-Browning, M. L. (2011). Birth to weaning kid traits from a complete diallel of Boer, Kiko, and Spanish meat goat breeds semi-intensively managed on humid subtropical pasture’. J. Anim. Sci, 89, 2696–2707. Crossref

Casey, N. H., & van Niekerk, W. A. (1988). The boer goat. I. Origin, adaptability, performance testing, reproduction and milk production. Small Ruminant Research, 1(3), 291–302. Crossref

Crow, J. F. (1986). Basic concepts in population, quantitative, and evolutionary genetics. New York: W.H. Freeman and Company.

Crow, J. F. (2001). Heterosis. Encyclopedia of Genetics, 933. Crossref

Falconer, D. S., & Mackay, T. F. C. (1996). Introduction to Quantitative Genetics (4th ed.). Edinburgh: Prentice Hall.

Hartl, D. L., & Clark, A. G. (1997). Principles of Population genetics (3rd ed.). Massachusetts: Sinauer Associates, Inc.

Harville, D. A. (2012). Maximum Likelihood Approaches to Variance Component and to Related Problems Estimation. Journal of the American Statistical Association, 72(358), 320–338. Crossref

Henderson, C. R. (1984). Applications of Linear Models in Animal Breeding Models. Guelph.

Hiemstra, S. J., Drucker, A. G., Tvedt, M. W., Louwaars, N., Oldenbroek, J. K., Awgichew, K., … Bhat, P. N. (2006). Exchange, Use and Conservation of Animal Genetic Resources Centre for Genetic Resources, the Netherlands (CGN). Wageningen: Centre for Genetic Resources, the Netherlands (CGN). Retrieved from Link

Kaps, M., & Lamberson, W. R. (2004). Biostatistics for animal science. (M. Kaps and W. Lamberson, Eds.). Wallingford: Cabi. Crossref

Kinghorn, B., van der Werf, J., & Ryan, M. (1999). Animal Breeding: Use of New Technologies. Sydney: UNiversity of Sydney.

Komender, P., & Hoeschele, I. (1989). Use of Mixed-Model Methodology to Improve Estimation of Crossbreeding Parameters, 101–113. Crossref

Lynch, M., & Walsh, B. (1998). Genetics and Analysis of Quantitative Traits. Sunderland, MA: Sinauer Associates, Inc.

Munoz, F., & Sanchez, L. (2018). breedR: Statistical Methods for Forest Genetic Resources Analysts. R package version 0.12-2. Retrieved from Link

Nugroho, T., Nurhidayati, A., Ayuningtyas, A. I. I., Kustiyani, C., Prastowo, S., & Widyas, N. (2018). Birth and weaning weight of kids from different Boer goat crosses. In IOP Conference Series: Earth and Environmental Science (Vol. 142, p. 012010). Crossref

Oldenbroek, J. K. (Ed.). (2007). Utilisation and conservation of farm animal genetic resources. Wageningen: Wageningen Academic Publisher. Crossref

Oldenbroek, K., & Waaij, L. van der. (2015). Textbook animal breeding. Animal breeding and genetic for BSc student. Wageningen: Center for Genetic Resources and Animal Breeding and Genomics Group, Wageningen University and Reasearch Center, The Netherlands. Groen Kennisnet.

Ott, R. L., & Longnecker, M. (2010). An Introduction to Statistical Methods and Data Analysis. Statistics (6th ed.). Belmont: Brooks/Cole.

Pandjono, Rusman, & Budisatria, I. G. S. (2014). Carcass Characteristics of Bligon and Kejobong Goats. In Proceedings of the 16th AAAP Animal Science Congress Vol. II 10-14 November 2014 (Vol. II, pp. 973–975). Yogyakarta: Gadjah Mada University. Retrieved from Link

Quaas, A. R. L. (2012). Computing the Diagonal Elements and Inverse of a Large Numerator Relationship Matrix the Diagonal Elements and Inverse of a Large Numerator Computing Matrix Relationship. Biometrics, 32(4), 949–953. Crossref

R Core Team. (2015). R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. Retrieved from Link

Rhone, J. A., Waldron, D. F., & Herring, A. D. (2013). Performance of Boer-Spanish and Spanish goats in Texas I : Body weights, fertility, prolificacy, and number of kids weaned Performance of Boer-Spanish and Spanish goats in Texas I : Body weights, fertility, prolificacy, and number of kids weaned. J. Anim. Sci, 91, 4679–4683. Crossref

Schoeman, S. J., Els, J. F., & van Niekerk, M. M. (1997). Variance components of early growth traits in the Boer goat. Small Ruminant Research, 26(1–2), 15–20. Crossref

Sutarno, & Setyawan, A. D. (2015). Review : Genetic diversity of local and exotic cattle and their crossbreeding impact on the quality of Indonesian cattle. Biodiversitas, 16(2), 327–354. Crossref

van Niekerk, W. A., & Casey, N. H. (1988). The Boer goat. II. Growth, nutrient requirements, carcass, and meat quality. Small Ruminant Research, 1, 355–368. Crossref

Waaij, K. O. en L. van der. (2014). Animal Breeding and Genetics for BSc Student. Netherland: Wegeningen University and Research Centre. Retrieved from Link

Widi, T. S. M. (2015). Mapping the impact of crossbreeding in smallholder cattle systems in Indonesia. Wageningen University and Research Centre. Retrieved from Link

Williams, J. L., Aguilar, I., Rekaya, R., & Bertrand, J. K. (2010). Estimation of breed and heterosis effects for growth and carcass traits in cattle using published crossbreeding studies. Journal of Animal Science, 88(2), 460–466. Crossref

Williams, R. B. H., Chan, E. K. F., Cowley, M. J., & Little, P. F. R. (2007). The influence of genetic variation on gene expression, 17, 1707–1716. Crossref

Wodzicka-Tomaszewska, M., Djajanegara, A., Gardiner, S., Wiradarya, T. R., & Mastika, I. M. (1993). Small Ruminant Production in the Humid Tropics. Surakarta: Sebelas Maret University Press.

Wright, S. (1922). Coefficients of Inbreeding and Relationship. The American Naturalist, 56(645), 330–338. Retrieved from Link

Zhang, Chun-yan, Zhang, Y., Xu, D., Li, X., Su, J., & Yang, L. (2009). Genetic and phenotypic parameter estimates for growth traits in Boer goat. Livestock Science, 124(1–3), 66–71. Crossref

Zhang, Chunyan, Yang, L., & Shen, Z. (2008). Variance components and genetic parameters for weight and size at birth in the Boer goat. Livestock Science, 115(1), 73–79. Crossref

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